PlantsT Affy GeneChip Promoters Page


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We have loaded in our database the genes for the Affymetrix chip. The sequences were loaded with +2000bp off each end of the gene for users to acquire promoter regions. Once the user inputs a list of identifiers our program will output a list of promoter regions (5') and in a FASTA format. The user can check if this is satisfactory then fill out the form to send the sequences to MEME (Multiple Em for Motif Elicitation) for their analysis.

Affymetrix Chip
Number of bases before the gene to select	(1-2000 bp)
Enter a text file to search
Or paste a list of ID's

This data set has 8297 entries. It is Affymetrix's first Arabidopsis GeneChip. In our system now, only 8111 entries are annotated, the other 186 are a confusion for us to decide which gene is correct for an Affy ID.

This data set has 22814 entries. In other words, its Affymetrix's whole Arabidopsis Genome. The second chip to be released. We have almost all entries except for those named (orf 543 etc).

Come to the download center to get the files you want. We have the whole databases for you to get, as well as files intended for the Genespring software