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We have complipiled a list of files that may be of interest for the researchers that use these Affymetrix GeneChips. Just right click and save as, or click to view the files. Some files are really big though.

The Genespring™ genome file is a compressed archive which must be "unzipped" using a decompression program (eg. "WinZip" at http://www.winzip.com/). Three files will be extracted in the decompression process: "arabidopsis genome file.txt", "arabidopsis.seq" and "Arabidopsis.genomedef". The "arabidopsis genome file.txt" contains AGI identifiers, chromosomal position, and descriptions for the Affymetrix™ Arabidopsis chip probe sets. The "arabidopsis.seq" file contains the full sequence of each chromosome (based on the latest sequences from TIGR). To install these files on Genespring™ software you need to start the “New genome installation wizard” function on the program and specify the location of these files as you proceed with the genome installation, as described in the Genespring™ user manual.

If you are using a previous version of our Genespring files, you can simply replace the old files with the new ones. You don't need to install them with the "New genome wizard."

Arabidopsis Genespring Genome File (Zip file ~37MB)   Download File
Excel file of probe and AGI identifiers for AtGenome Chip (ZIP file ~137KB)   Download File
Excel file of probe and AGI identifiers for ATH1 Chip   Download File
WinZip   WinZip.com
 
  This data set has 8297 entries. It is Affymetrix's first Arabidopsis GeneChip. In our system now, only 8111 entries are annotated, the other 186 are a confusion for us to decide which gene is correct for an Affy ID.
  This data set has 22814 entries. In other words, its Affymetrix's whole Arabidopsis Genome. The second chip to be released. We have almost all entries except for those named (orf 543 etc).
 


Come to the download center to get the files you want. We have the whole databases for you to get, as well as files intended for the Genespring software

 

 
 
 
 
 
 



 

A distributed project investigating gene networks that control uptake and accumulation of plant nutrients and toxic metals. Funded by the plant genome program of the National Science Foundation (DBI-0077378). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.

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