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Family 1.A.1 - The Voltage Gated Ion Channel Superfamily        

Family ID: 52597

Proteins of the VIC family are ion-selective channel proteins found in a wide range of bacteria, archaea and eukaryotes. They are often homo- or heterooligomeric structures with several dissimilar subunits (e.g., a1-a2-d-b Ca2+ channels, ab1b2Na+ channels or (a)4-b K+ channels), but the channel and the primary receptor is usually associated with the a (or a1) subunit. Functionally characterized members are specific for K+, Na+ or Ca2+. The K+ channels usually consist of homotetrameric structures with each a-subunit possessing six transmembrane spanners (TMSs). Many voltage-sensitive K+ channels function with b-subunits that modify K+ channel gating. These nonintegral b-subunits are oxidoreductases that coassemble with the tetrameric a-subunits in the endoplasmic reticulum and remain tightly adherent to the a subunit tetramer. The high resolution b-subunit structure is available

The a1 and a subunits of the Ca2+ and Na+ channels, respectively, are about four times as large as the K+ channel a-subunits and possess 4 units, each with 6 TMSs separated by a hydrophilic loop, for a total of 24 TMSs. These large channel proteins form heterotetra-unit structures equivalent to the homotetrameric structures of most K+ channels. All four units of the Ca2+ and Na+ channels are homologous to the single unit in the homotetrameric K+ channels. Ion flux via the eukaryotic channels is generally controlled by the transmembrane electrical potential (hence the designation, voltage-sensitive) although some are controlled by ligand or receptor binding.

 

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Mäser P, Thomine S, Schroeder JI, Ward JM, Hirschi K, Sze H, Talke IN, Amtmann A, Maathuis FJM, Sanders D, Harper JH, Tchieu J, Gribskov M, Persans MW, Salt DE, Kim SA, Guerinot ML (2001)
Phylogenetic relationships within cation-transporter families of Arabidopsis thaliana. Plant Physiol 2001 Aug;126(4):1646-67

 

 

  Arabidopsis Families      
 
1.A.1.4.1 - K+ channel

At2g26650 AKT1 potassium transporter
At4g22200 AKT2/AKT3 potassium channel protein
At4g32500 AKT5 potassium channel
At2g25600 AKT6 potassium transporter

At5g55630 KCO1 potassium channel
At5g46370 KCO2 potassium channel
At5g46360 KCO3 potassium channel
At1g02510 KCO4 potassium channel
At4g01840 KCO5 potassium channel
At4g18160 KCO6 potassium channel

At5g46240 KAT1 potassium channel
At4g18290 KAT2 potassium channel
At4g32650 KAT3/AKT4 potassium channel

At3g02850 SKOR -stelar K+ outward rectifying channel
At5g37500 GORK -stelar K+ outward rectifying channel



1.A.1.5.1 - Cyclic nucleotide-gated cation channel

At5g53130 CNGC1 cyclic nucleotide-regulated ion channel
At5g15410 CNGC2 cyclic nucleotide-gated cation channel
At2g46430 CNGC3 cyclic nucleotide-regulated ion channel
At5g54250 CNGC4 cyclic nucleotide-regulated ion channel
At5g57940 CNGC5 cyclic nucleotide-regulated ion channel
At2g23980 CNGC6 cyclic nucleotide-regulated ion channel
At1g15990 CNGC7 cyclic nucleotide-regulated ion channel
At1g19780 CNGC8 cyclic nucleotide-regulated ion channel
At4g30560 CNGC9 cyclic nucleotide-regulated ion channel
At1g01340 CNGC10 cyclic nucleotide-regulated ion channel
At2g46440 CNGC11 cyclic nucleotide-regulated ion channel
At2g46450 CNGC12 cyclic nucleotide-regulated ion channel
At4g01010 CNGC13 cyclic nucleotide gated channel
At2g24610 CNGC14 cyclic nucleotide-regulated ion channel
At2g28260 CNGC15 cyclic nucleotide-regulated ion channel
At3g48010 CNGC16 cyclic nucleotide-gated channel
At4g30360 CNGC17 cyclic nucleotide-regulated ion channel
At5g14870 CNGC18 cyclic nucleotide-regulated ion channel
At3g17690 CNGC19 cyclic nucleotide-regulated ion channel
At3g17700 CNGC20 cyclic nucleotide-regulated ion channel

 
  Yeast Families      
 

YGR217W CCH1 calcium channel (alpha-subunit)
YJL093C TOK1 outward rectifying K+ channel


     
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A distributed project investigating gene networks that control uptake and accumulation of plant nutrients and toxic metals. Funded by the plant genome program of the National Science Foundation (DBI-0077378). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.

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