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CHX13
(Best curated entry)

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General Information  
Name: CHX13
PlantsT ID: 27122
Species: Arabidopsis thaliana (mouse-ear cress)
Synonyms: Locus.8630, CHR2v01212004, Model.11887, At2g30240, 51595.m11176, T9D9.5.
Keywords: arabidopsis-genome7, chx, uniporter, cpa2, monovalent cation proton antiporter, 2.a.37.
Description: CHX13 cation/proton exchanger

Electrochemical Potential-driven Transporters - Class 3-- Secondary carrier-type facilitators. Transport systems are included in this category if they utilize a carrier-mediated process to catalyze uniport (a single species is transported by facilitated diffusion in a process not coupled to the utilization of a primary source of energy), antiport (two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy) and/or symport (two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy). These systems are usually stereospecific. Solute:solute countertransport is a characteristic feature of secondary carriers.

Porters(uniporters,symporters,antiporters)-- Transport systems are included in this subclass if they utilize a carrier-mediated process to catalyze uniport (a single species is transported either by facilitated diffusion or in a membrane potential-dependent process if the solute is char ged), antiport (two or more species are transported in opposite directions in a tightly coupled process, not coupled to a direct form of energy other than chemiosmotic energy) and/or symport (two or more species are transported together in th e same direction in a tightly coupled process, not coupled to a direct form of energy other than chemiosmotic energy).

2.A.37 The Monovalent Cation:Proton Antiporter-2 Family-- The CPA2 family is a moderately large family (over 100 sequenced members) from bacteria, archaea and eukaryotes. Among the functionally well-characterized members of the family are (1) the KefB/KefC K+ efflux proteins of E. coli which may be capable of catalyzing both K+/H+ antiport and K+ uniport, depending on conditions (Bakker et al., 1987; Booth et al., 1996; Munro et al., 1991), (2) the Na+/H+ antiporter of Enterococcus hirae(Waser et al., 1992) and (3) the K+/H+ antiporter of S. cerevisiae. It has been proposed that under normal physiological conditions, these proteins may function by essentially the same mechanism (Reizer et al., 1992). KefC and KefB of E. coli are responsible for glutathione-gated K+ efflux (Ferguson et al., 1993, 1997). Each of these proteins consists of a transmembrane hydrophobic N-terminal domain, and a less well-conserved C-terminal hydrophilic domain. Each protein interacts with a second protein encoded by genes that overlap the gene encoding the primary transporter. The KefC ancillary protein is YabF while the KefB ancillary protein is YheR. These ancillary proteins stimulate transport activity about 10-fold (Miller et al., 2000). These proteins are important for cell survival during exposure to toxic metabolites, possibly because they can release K+, allowing H+ uptake. Activation of the KefB or KefC K+ efflux system only occurs in the presence of glutathione and a reactive electrophile such as methylglyoxal or N-ethylmaleimide. Formation of the methylglyoxal-glutathione conjugate, S-lactoylglutathione, is catalyzed by glyoxalase I, and S-lactoylglutathione activates KefB and KefC (MacLean et al., 1998). H+ uptake (acidification of the cytoplasm) accompanying or following K+ efflux may serve as a further protective mechanism against electrophile toxicity (Booth et al., 1996; Ferguson et al., 1993, 1997; Stumpe et al., 1996).

Families  
Families and groups to which
this sequence belongs:
Transporter Classification  (3665 members)
Electrochemical Potential-driven Transporters - Class 3  (2109 members)
Porters(uniporters,symporters,antiporters)  (2109 members)
2.A.37 The Monovalent Cation:Proton Antiporter-2 Family  (65 members)

This protein is part of the following alignment(s):
View alignment 2.A.37
MSF format HTML format Define HTML options yourself Jalview
Protein  
Protein Features: Protein 215864 Feature: 22080, Method: TMpred 50-70 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 51-73 Potential transmembrane helix domain Feature: 52431, Method: hmmpfam (HMMER2.1.1) 60-447 Sodium/hydrogen exchanger family Feature: 27722, Method: TMHMM 80-102 Potential transmembrane helix domain Feature: 22080, Method: TMpred 83-103 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 112-134 Potential transmembrane helix domain Feature: 22080, Method: TMpred 113-134 Potential transmembrane spanning region Feature: 22080, Method: TMpred 146-168 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 146-168 Potential transmembrane helix domain Feature: 179290, Method: hmmpfam (HMMER2.3.2) 179-386 C4-dicarboxylate transporter/malic acid transport protein Feature: 22080, Method: TMpred 242-262 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 247-269 Potential transmembrane helix domain Feature: 27722, Method: TMHMM 282-304 Potential transmembrane helix domain Feature: 22080, Method: TMpred 283-304 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 334-356 Potential transmembrane helix domain Feature: 27722, Method: TMHMM 369-388 Potential transmembrane helix domain Feature: 27722, Method: TMHMM 393-415 Potential transmembrane helix domain Feature: 27722, Method: TMHMM 428-450 Potential transmembrane helix domain Feature: 22080, Method: TMpred 431-450 Potential transmembrane spanning region
1. Potential transmembrane spanning region (TMpred)
2. Potential transmembrane helix domain (TMHMM)
3. Sodium/hydrogen exchanger family (hmmpfam (HMMER2.1.1))
4. C4-dicarboxylate transporter/malic acid transport protein (hmmpfam (HMMER2.3.2))



Protein Sequence:
  1 MELSMFGRED TNSSQWGEVH GPFMLEEIVC QAQNMLTSRG IFMKSNPLKY ALPLLLLQMS
 61 VIIVTSRLIF RVLQPLKQGM ISAQVLTGVV LGPSFLGHNV IYMNMFLPAG GKIIIQTLSN
121 VGFVIHLFLL GLKIDGSIIR KAGSKAILIG TASYAFPFSL GNLTIMFISK TMGLPSDVIS
181 CTSSAISLSS MTSFPVTTTV LAELNILNSE LGRLATHCSM VCEVCSWFVA LAFNLYTRDR
241 TMTSLYALSM IIGLLLVIYF VFRPIIVWLT QRKTKSMDKK DVVPFFPVLL LLSIASLSGE
301 AMGVHAAFGA FWLGVSLPDG PPLGTELAAK LEMFASNLFL PCFIAISGLQ TNFFEITESH
361 EHHVVMIEII LLITYGCKFL GTAAASAYCQ TQIGDALCLA FLMCCQGIIE VYTTIVWKDA
421 QVVDTECFNL VIITILFVTG ISRFLVVYLY DPSKRYKSKS KRTILNTRQH NLQLRLLLGL
481 YNVENVPSMV NLLEATYPTR FNPISFFTLH LVELKGRAHA LLTPHHQMNK LDPNTAQSTH
541 IVNAFQRFEQ KYQGALMAQH FTAAAPYSSI NNDICTLALD KKATLIVIPF HKQYAIDGTV
601 GQVNGPIRTI NLNVLDAAPC SVAIFIDRGE TEGRRSVLMT NTWQNVAMLF IGGKDDAEAL
661 ALCMRMAEKP DLNVTMIHFR HKSALQDEDY SDMSEYNLIS DFKSYAANKG KIHYVEEIVR
721 DGVETTQVIS SLGDAYDMVL VGRDHDLESS VLYGLTDWSE CPELGVIGDM LTSPDFHFSV
781 LVVHQQQGDD LLAMDDSYKL PNVEHQKIGD TGIQQRFSAE EGFTTIDLGK R

View this sequence in FASTA format
BLAST this sequence against our PlantsT databases
Length: 831 amino acids
Molecular Weight: 92180.43 Da
Gene Expression Data  
Microarray Data in Different Organs
and at Different Ages
(click on graph to view data)

Data downloaded from genevestigator
      
Microarray Data
(Click on graph to view legend)

Images provided by John Ward at AMPL.
Data set 1 unavailable for AT2G30240

Data set 2 unavailable for AT2G30240

Data set 3 unavailable for AT2G30240
Protein History and Links to Sources  
Main Entry: CHX13 ID:27122 CHX13 cation/proton exchanger
is linked to these entries:
Current Entry:
PROTEIN: CHX13 DNA: CHX13 RNA: CHX13
TAIR7:At2g30240.1 TAIR7:At2g30240.1 At-genome:At2g30240
Superceded Entry:
PROTEIN: CHX13 DNA: CHX13 RNA: CHX13
At-genome:At2g30240 At-genome:At2g30240 At-genome:At2g30240
GenBank-P:NP_180583
GenBank-P:T00576
GenBank-P:AAC16929
Strain   
At2g30240: Order strain
External Resources   
At2g30240
The Institute for Genomics Research  TIGR The Arabidopsis Information Resource  TAIR The Arabidopsis Information Resourceprotein  TAIR Salk Institute Genomic Analysis LaboratoryGENE  SIGNAL Salk Institute Genomic Analysis LaboratoryGENE  SIGNAL AtEnsemble at Nottingham Arabidopsis Stock Centregene  NASC AtEnsembl at Nottingham Arabidopsis Stock Centregene  NASC
Massively Parallel Signature SequencingGene  MPSS Arabidopsis thaliana Plant Genome Database  ATGDB Arabidopsis thaliana Plant Genome Database  ATGDB SubCellular Proteomic Database (SUBA)- Univ. of Western Australia  UWA Plant membrane protein database  ARAMEMNON The Institute for Genomic Research  TIGR ATIDB
Community  
Community Annotations: annotate Annotate this entry
Chronology  
Created: 2007-08-29
Revision: 14 September 2007 YL - Merged 215867(AT2G30240.1)
23 January 2002 JT - Updated Annotation
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A distributed project investigating gene networks that control uptake and accumulation of plant nutrients and toxic metals. Funded by the plant genome program of the National Science Foundation (DBI-0077378). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.

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