plantsT logo
Home  |  Search  |  Families  |  ICP  |  Papers  |  Site Map  | 

At1g30450
(Best curated entry)

General   |   RNA/DNA   |   Citations   |   Mutants   |   XML Login
General Information  
Name: At1g30450
PlantsT ID: 27094
Species: Arabidopsis thaliana (mouse-ear cress)
Synonyms: Locus.2809, Model.7896, CHR1v01212004, 68170.m02761, F26G16_9.
Keywords: arabidopsis-genome7, ccc, cation chloride cotransporter, 2.a.30.
Description: cation-chloride co-transporter, putative
cation-chloride co-transporter, putative

Electrochemical Potential-driven Transporters - Class 3-- Secondary carrier-type facilitators. Transport systems are included in this category if they utilize a carrier-mediated process to catalyze uniport (a single species is transported by facilitated diffusion in a process not coupled to the utilization of a primary source of energy), antiport (two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy) and/or symport (two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy). These systems are usually stereospecific. Solute:solute countertransport is a characteristic feature of secondary carriers.

Porters(uniporters,symporters,antiporters)-- Transport systems are included in this subclass if they utilize a carrier-mediated process to catalyze uniport (a single species is transported either by facilitated diffusion or in a membrane potential-dependent process if the solute is char ged), antiport (two or more species are transported in opposite directions in a tightly coupled process, not coupled to a direct form of energy other than chemiosmotic energy) and/or symport (two or more species are transported together in th e same direction in a tightly coupled process, not coupled to a direct form of energy other than chemiosmotic energy).

2.A.30 The Cation-Chloride Cotransporter Family-- Members of the CCC family, found in animals, plants, fungi and bacteria, can catalyze NaCl/KCl symport, NaCl symport, or KCl symport depending on the system. The NaCl/KCl symporters are specifically inhibited by bumetanide while the NaCl symporters are specifically inhibited by thiazide. Most characterized CCC family proteins are from higher animals, but one has been partially characterized from Nicotiana tabacum (a plant), and homologous ORFs have been sequenced from Caenorhabditis elegans (worm), Saccharomyces cerevisiae (yeast) and Synechococcus sp. (blue green bacterium). The latter proteins are of unknown function. These proteins show some sequence similarity to members of the APC family (TC #2.A.3), but this sequence similarity is insufficient to establish homology. CCC family proteins are usually large (between 1000 and 1200 amino acyl residues), and possess 12 putative transmembrane spanners flanked by large N-terminal and C-terminal hydrophilic domains. Each of the major types of CCC family members in mammals exist as paralogous isoforms. These may differ in substrates transported. For example, of the four currently recognized KCl transporters, KCC1 and KCC4 both recognize KCl with similar affinities, but KCC1 exhibits anion selectivity: Cl- > SCN- = Br- > PO4-3 > I-, while KCl4 exhibits anion selectivity: Cl- > Br- > PO4-3 = I- > SCN-. Both are activated by cell swelling under hypotonic conditions (Mercado et al., 2000).

Families  
Families and groups to which
this sequence belongs:
Transporter Classification  (3665 members)
Electrochemical Potential-driven Transporters - Class 3  (2109 members)
Porters(uniporters,symporters,antiporters)  (2109 members)
2.A.30 The Cation-Chloride Cotransporter Family  (5 members)

Protein  
Protein Features: Protein 214700 Feature: 178847, Method: hmmpfam (HMMER2.3.2) 131-565 Transmembrane amino acid transporter protein Feature: 22080, Method: TMpred 132-153 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 136-158 Potential transmembrane helix domain Feature: 178829, Method: hmmpfam (HMMER2.3.2) 137-631 Amino acid permease Feature: 22080, Method: TMpred 159-179 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 168-190 Potential transmembrane helix domain Feature: 22080, Method: TMpred 211-230 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 211-233 Potential transmembrane helix domain Feature: 22080, Method: TMpred 272-291 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 272-290 Potential transmembrane helix domain Feature: 27722, Method: TMHMM 297-319 Potential transmembrane helix domain Feature: 22080, Method: TMpred 300-319 Potential transmembrane spanning region Feature: 22080, Method: TMpred 360-381 Potential transmembrane spanning region Feature: 52336, Method: hmmpfam (HMMER2.1.1) 369-461 CrcB-like protein Feature: 27722, Method: TMHMM 398-420 Potential transmembrane helix domain Feature: 22080, Method: TMpred 401-421 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 433-455 Potential transmembrane helix domain Feature: 22080, Method: TMpred 437-456 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 490-512 Potential transmembrane helix domain Feature: 22080, Method: TMpred 491-509 Potential transmembrane spanning region Feature: 22080, Method: TMpred 518-537 Potential transmembrane spanning region Feature: 27722, Method: TMHMM 555-577 Potential transmembrane helix domain Feature: 22080, Method: TMpred 560-579 Potential transmembrane spanning region
1. Transmembrane amino acid transporter protein (hmmpfam (HMMER2.3.2))
2. Potential transmembrane spanning region (TMpred)
3. Potential transmembrane helix domain (TMHMM)
4. Amino acid permease (hmmpfam (HMMER2.3.2))
5. CrcB-like protein (hmmpfam (HMMER2.1.1))



Protein Sequence:
  1 MDSGDIEEAG GNGEEEFRSG PRLGGSKYRP VVAHDRAVVE MSSIDPGSSS STLKNIKVVA
 61 PGDVGAGVRG PEDGVNGHQK ESKLELFGFD SLVNILGLKS MTGEQIQAPS SPRDGEDISI
121 TQGHPKPPAL KMGTMMGVFV PCLQNILGII YYIRFTWIVG MAGIGQGLVL VFLCGLCTFL
181 TTISLSAIAT NGAMKGGGPY YLIGRALGPE VGISIGLCFF LGNAVAGALY VLGAVETFLK
241 AFPAAGIFRE TITKVNGTAV SESIQSPNSH DLQVYGIVVT ILLCFIVFGG VKMINRVAPA
301 FLVPVLLSIF CIFIGIFLAK TDDPDNGITG LRLKSFKDNW GSAYQMTNDA GIPDPTGGTY
361 WSFNELVGLF FPAVTGIMAG SNRSASLKDT QKSIPVGTLA ATLTTTSLYL ISVLFFGAVA
421 TRDKLLTDRL LTATIAWPFP AIVHVGIILS TLGAALQSLT GAPRLLAAIA NDDILPILNY
481 FKVADTSEPH IATLFTAFIC IGCVVIGNLD LITPTVTMFY LLCYSGVNLS CFLLDLLDAP
541 SWRPRWKYHH WSLSFVGASL CIVIMFLISW SFTVVAIALA SLIYKYVGLK GKAGDWGDGF
601 KSAYFQLALR SLRSLGANQV HPKNWYPIPL VFCRPWGQLP ENVPCHPKLA DFANCMKKKG
661 RGMSIFVSIL DGDYYECAEE AKEACKQLAT YIEYKRCEGV AEIVVAPNMT EGFRGIIQTM
721 GLGNLKPNIV VMRYPEIWRR ENLTEIPSTF VGIINDCITA NKAVVIIKGL DEWPNEYQRQ
781 YGTIDLYWIV RDGGLMLLLS QLLLTKESFE SCKIQLFCIA EEDSDAEALK ADVKKFLYDL
841 RMHAEVIVVT MKSWDIRSEG NSQEDSLEAF DAAQRRISDY LGEIKRQGSN PLLANGKPMV
901 VNEQQVEKFL YTMLKLNSTI LSYSRMAAVV LVSLPPPPLN HPAYFYMEYM DLLVENVPRM
961 LIVRGYHRDV VTLFT

View this sequence in FASTA format
BLAST this sequence against our PlantsT databases
Length: 975 amino acids
Molecular Weight: 106644.81 Da
Gene Expression Data  
Microarray Data in Different Organs
and at Different Ages
(click on graph to view data)

Data downloaded from genevestigator
Data (by organ) unavailable for AT1G30450    Data (by ages) unavailable for AT1G30450
Microarray Data
(Click on graph to view legend)

Images provided by John Ward at AMPL.
Data set 1 unavailable for AT1G30450

Data set 2 unavailable for AT1G30450

Data set 3 unavailable for AT1G30450
Protein History and Links to Sources  
Main Entry: At1g30450 ID:27094 cation-chloride co-transporter, putative
is linked to these entries:
Current Entry:
PROTEIN: At1g30450 DNA: At1g30450 RNA: At1g30450
TAIR7:At1g30450.1 TAIR7:At1g30450.1 At-genome:At1g30450
Superceded Entry:
PROTEIN: AT1G30450.2 DNA: AT1G30450.2 RNA: 
TAIR7:At1g30450.2 TAIR7:At1g30450.2
Superceded Entry:
PROTEIN: AT1G30450.3 DNA: AT1G30450.3 RNA: 
TAIR7:At1g30450.3 TAIR7:At1g30450.3
Superceded Entry:
PROTEIN: At1g30450 DNA: At1g30450 RNA: At1g30450
At-genome:At1g30450 At-genome:At1g30450 At-genome:At1g30450
GenBank-P:NP_174333
Strain   
At1g30450: Order strain
External Resources   
At1g30450
The Institute for Genomics Research  TIGR The Arabidopsis Information Resource  TAIR The Arabidopsis Information Resourceprotein  TAIR Salk Institute Genomic Analysis LaboratoryGENE  SIGNAL Salk Institute Genomic Analysis LaboratoryGENE  SIGNAL AtEnsemble at Nottingham Arabidopsis Stock Centregene  NASC AtEnsembl at Nottingham Arabidopsis Stock Centregene  NASC
Massively Parallel Signature SequencingGene  MPSS Arabidopsis thaliana Plant Genome Database  ATGDB Arabidopsis thaliana Plant Genome Database  ATGDB SubCellular Proteomic Database (SUBA)- Univ. of Western Australia  UWA Plant Specific Database - Michigan State Univ.  PLANTSPECDB Plant membrane protein database  ARAMEMNON The Institute for Genomic Research  TIGR
ATIDB
Community  
Community Annotations: annotate Annotate this entry
Chronology  
Created: 2007-08-28
Revision: 14 September 2007 YL - Merged 214703(AT1G30450.1),215203(AT1G30450.2),215199(AT1G30450.3)
  favoriteAdd to your list of favorites
 

A distributed project investigating gene networks that control uptake and accumulation of plant nutrients and toxic metals. Funded by the plant genome program of the National Science Foundation (DBI-0077378). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.

Questions or comments? Please contact us.

© 2005 Purdue University
portions © 2000-2004, Regents of University of California